Bee Hive Monitoring System - Solutions for the automated health monitoring

Cerca de um terço da produção global de alimentos depende da polinização das abelhas, tornando-as vitais para a economia mundial. No entanto, existem diversas ameaças à sobrevivência das espécies de abelhas, tais como incêndios florestais, stress humano induzido, subnutrição, poluição, perda de biodiversidade, agricultura intensiva e predadores como as vespas asiáticas. Destes problemas, pode-se observar um aumento da necessidade de soluções automatizadas que possam auxiliar na monitorização remota de colmeias de abelhas. O objetivo desta tese é desenvolver soluções baseadas em Aprendizagem Automática para problemas que podem ser identificados na apicultura, usando técnicas e conceitos de Deep Learning, Visão Computacional e Processamento de Sinal. Este documento descreve o trabalho da tese de mestrado, motivado pelo problema acima exposto, incluindo a revisão de literatura, análise de valor, design, planeamento de testes e validação e o desenvolvimento e estudo computacional das soluções. Concretamente, o trabalho desta tese de mestrado consistiu no desenvolvimento de soluções para três problemas – classificação da saúde de abelhas a partir de imagens e a partir de áudio, e deteção de abelhas e vespas asiáticas. Os resultados obtidos para a classificação da saúde das abelhas a partir de imagens foram significativamente satisfatórios, excedendo os que foram obtidos pela metodologia definida no trabalho base utilizado para a tarefa, que foi encontrado durante a revisão da literatura. No caso da classificação da saúde das abelhas a partir de áudio e da deteção de abelhas e vespas asiáticas, os resultados obtidos foram modestos e demonstram potencial aplicabilidade das respetivas metodologias desenvolvidas nos problemas-alvo. Pretende-se que as partes interessadas desta tese consigam obter informações, metodologias e perceções adequadas sobre o desenvolvimento de soluções de IA que possam ser integradas num sistema de monitorização da saúde de abelhas, incluindo custos e desafios inerentes à implementação das soluções. O trabalho futuro desta dissertação de mestrado consiste em melhorar os resultados dos modelos de classificação da saúde das abelhas a partir de áudio e de deteção de objetos, incluindo a publicação de artigos para obter validação pela comunidade científica.Up to one third of the global food production depends on the pollination of honey bees, making them vital for the world economy. However, between forest fires, human-induced stress, poor nutrition, pollution, biodiversity loss, intensive agriculture, and predators such as Asian Hornets, there are plenty of threats to the honey bee species’ survival. From these problems, a rise of the need for automated solutions that can aid with remote monitoring of bee hives can be observed. The goal of this thesis is to develop Machine Learning based solutions to problems that can be identified in beekeeping and apiculture, using Deep Learning, Computer Vision and Signal Processing techniques and concepts. The current document describes master thesis’ work, motivated from the above problem statement, including the literature review, value analysis, design, testing and validation planning and the development and computational study of the solutions. Specifically, this master thesis’ work consisted in developing solutions to three problems – bee health classification through images and audio, and bee and Asian wasp detection. Results obtained for the bee health classification through images were significantly satisfactory, exceeding those reported by the baseline work found during literature review. On the case of bee health classification through audio and bee and Asian wasp detection, these obtained results were modest and showcase potential applicability of the respective developed methodologies in the target problems. It is expected that stakeholders of this thesis obtain adequate information, methodologies and insights into the development of AI solutions that can be integrated in a bee health monitoring system, including inherent costs and challenges that arise with the implementation of the solutions. Future work of this master thesis consists in improving the results of the bee health classification through audio and the object detection models, including publishing of papers to seek validation by the scientific community

Characterisation of microbial attack on archaeological bone

As part of an EU funded project to investigate the factors influencing bone preservation in the archaeological record, more than 250 bones from 41 archaeological sites in five countries spanning four climatic regions were studied for diagenetic alteration. Sites were selected to cover a range of environmental conditions and archaeological contexts. Microscopic and physical (mercury intrusion porosimetry) analyses of these bones revealed that the majority (68%) had suffered microbial attack. Furthermore, significant differences were found between animal and human bone in both the state of preservation and the type of microbial attack present. These differences in preservation might result from differences in early taphonomy of the bones. © 2003 Elsevier Science Ltd. All rights reserved

Effects of hospital facilities on patient outcomes after cancer surgery: an international, prospective, observational study

© 2022 The Author(s). Published by Elsevier Ltd. This is an Open Access article under the CC BY 4.0 licenseBackground: Early death after cancer surgery is higher in low-income and middle-income countries (LMICs) compared with in high-income countries, yet the impact of facility characteristics on early postoperative outcomes is unknown. The aim of this study was to examine the association between hospital infrastructure, resource availability, and processes on early outcomes after cancer surgery worldwide. Methods: A multimethods analysis was performed as part of the GlobalSurg 3 study—a multicentre, international, prospective cohort study of patients who had surgery for breast, colorectal, or gastric cancer. The primary outcomes were 30-day mortality and 30-day major complication rates. Potentially beneficial hospital facilities were identified by variable selection to select those associated with 30-day mortality. Adjusted outcomes were determined using generalised estimating equations to account for patient characteristics and country-income group, with population stratification by hospital. Findings: Between April 1, 2018, and April 23, 2019, facility-level data were collected for 9685 patients across 238 hospitals in 66 countries (91 hospitals in 20 high-income countries; 57 hospitals in 19 upper-middle-income countries; and 90 hospitals in 27 low-income to lower-middle-income countries). The availability of five hospital facilities was inversely associated with mortality: ultrasound, CT scanner, critical care unit, opioid analgesia, and oncologist. After adjustment for case-mix and country income group, hospitals with three or fewer of these facilities (62 hospitals, 1294 patients) had higher mortality compared with those with four or five (adjusted odds ratio [OR] 3·85 [95% CI 2·58–5·75]; p<0·0001), with excess mortality predominantly explained by a limited capacity to rescue following the development of major complications (63·0% vs 82·7%; OR 0·35 [0·23–0·53]; p<0·0001). Across LMICs, improvements in hospital facilities would prevent one to three deaths for every 100 patients undergoing surgery for cancer. Interpretation: Hospitals with higher levels of infrastructure and resources have better outcomes after cancer surgery, independent of country income. Without urgent strengthening of hospital infrastructure and resources, the reductions in cancer-associated mortality associated with improved access will not be realised. Funding: National Institute for Health and Care Research

Global variation in postoperative mortality and complications after cancer surgery: a multicentre, prospective cohort study in 82 countries

© 2021 The Author(s). Published by Elsevier Ltd. This is an Open Access article under the CC BY-NC-ND 4.0 licenseBackground: 80% of individuals with cancer will require a surgical procedure, yet little comparative data exist on early outcomes in low-income and middle-income countries (LMICs). We compared postoperative outcomes in breast, colorectal, and gastric cancer surgery in hospitals worldwide, focusing on the effect of disease stage and complications on postoperative mortality. Methods: This was a multicentre, international prospective cohort study of consecutive adult patients undergoing surgery for primary breast, colorectal, or gastric cancer requiring a skin incision done under general or neuraxial anaesthesia. The primary outcome was death or major complication within 30 days of surgery. Multilevel logistic regression determined relationships within three-level nested models of patients within hospitals and countries. Hospital-level infrastructure effects were explored with three-way mediation analyses. This study was registered with ClinicalTrials.gov, NCT03471494. Findings: Between April 1, 2018, and Jan 31, 2019, we enrolled 15 958 patients from 428 hospitals in 82 countries (high income 9106 patients, 31 countries; upper-middle income 2721 patients, 23 countries; or lower-middle income 4131 patients, 28 countries). Patients in LMICs presented with more advanced disease compared with patients in high-income countries. 30-day mortality was higher for gastric cancer in low-income or lower-middle-income countries (adjusted odds ratio 3·72, 95% CI 1·70–8·16) and for colorectal cancer in low-income or lower-middle-income countries (4·59, 2·39–8·80) and upper-middle-income countries (2·06, 1·11–3·83). No difference in 30-day mortality was seen in breast cancer. The proportion of patients who died after a major complication was greatest in low-income or lower-middle-income countries (6·15, 3·26–11·59) and upper-middle-income countries (3·89, 2·08–7·29). Postoperative death after complications was partly explained by patient factors (60%) and partly by hospital or country (40%). The absence of consistently available postoperative care facilities was associated with seven to 10 more deaths per 100 major complications in LMICs. Cancer stage alone explained little of the early variation in mortality or postoperative complications. Interpretation: Higher levels of mortality after cancer surgery in LMICs was not fully explained by later presentation of disease. The capacity to rescue patients from surgical complications is a tangible opportunity for meaningful intervention. Early death after cancer surgery might be reduced by policies focusing on strengthening perioperative care systems to detect and intervene in common complications. Funding: National Institute for Health Research Global Health Research Unit